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model: random slopes only", "Adding cross-level moderation", "Priors", "Fitting", "Reading the result", "The full summary", "Per-school coefficients", "What changed relative to Chapter 01", "See also" ], "created": "2020-07-05 13:36:43", "modified": "2026-08-11 00:19:48", "commits": 18 }, { "source": "Chapter-05.Rmd", "filename": "Chapter-05.html", "title": "Chapter 05: Reading the output", "author": "Kjell Nygren", "engine": "knitr::rmarkdown", "headings": [ "Chapter 05: Reading the output", "Two blocks, two prefixes", "print()", "summary()", "Pr(Prior_tail)", "Accessors", "ranef()", "coef()", "fixef()", "The raw draws", "Credible intervals", "Dispersion and convergence metadata", "Quick reference", "See also" ], "created": "2020-07-05 13:36:43", "modified": "2026-08-11 00:19:48", "commits": 19 }, { "source": "Chapter-06.Rmd", "filename": "Chapter-06.html", "title": "Chapter 06: Convergence and tv_tol", "author": "Kjell Nygren", "engine": "knitr::rmarkdown", "headings": [ "Chapter 06: Convergence and tv_tol", "The contract", "When sweeps are needed at all", "What m_convergence responds to", "The sweep history", "Convergence plots", "Verifying the certificate empirically", "What convergence does not mean", "See also" ], "created": "2020-07-05 13:36:43", "modified": "2026-08-11 00:19:48", "commits": 16 }, { "source": "Chapter-07.Rmd", "filename": "Chapter-07.html", "title": "Chapter 07: Estimated variance components and the pilot stage", "author": "Kjell Nygren", "engine": "knitr::rmarkdown", "headings": [ "Chapter 07: Estimated variance components and the pilot stage", "Fixed versus sampled", "The truncation window", "Fitting", "What the variance components look like", "The cost of honesty", "The pilot stage", "Reading the summary", "When to sample the variance components", "See also" ], "created": "2020-07-05 13:36:43", "modified": "2026-08-11 00:19:48", "commits": 16 }, { "source": "Chapter-08.Rmd", "filename": "Chapter-08.html", "title": "Chapter 08: Observation dispersion", "author": "Kjell Nygren", "engine": "knitr::rmarkdown", "headings": [ "Chapter 08: Observation dispersion", "The default: one fixed variance", "Per-group dispersion", "Fitting", "Reading the dispersion", "Sampling a single scalar", "Choosing", "See also" ], "created": "2020-07-05 13:36:43", "modified": "2026-08-11 00:19:48", "commits": 17 }, { "source": "Chapter-09.Rmd", "filename": "Chapter-09.html", "title": "Chapter 09: Poisson GLMMs", "author": "Kjell Nygren", "engine": "knitr::rmarkdown", "headings": [ "Chapter 09: Poisson GLMMs", "What changes for non-Gaussian responses", "The model", "Priors and fitting", "Interpreting on the count scale", "The full summary", "Convergence", "Cost", "See also" ], "created": "2020-07-05 13:36:43", "modified": "2026-08-11 00:19:48", "commits": 16 }, { "source": "Chapter-10.Rmd", "filename": "Chapter-10.html", "title": "Chapter 10: Binomial GLMMs", "author": "Kjell Nygren", "engine": "knitr::rmarkdown", "headings": [ "Chapter 10: Binomial GLMMs", "Setting up", "Full rank is not the same as estimable", "Fitting", "Reading it on the probability scale", "Per-state effects", "Why the sweep count is higher", "The full summary", "Practical notes for binary data", "See also" ], "created": "2020-07-05 01:43:45", "modified": "2026-08-11 00:19:48", "commits": 16 }, { "source": "Chapter-11.Rmd", "filename": "Chapter-11.html", "title": "Chapter 11: Point estimates without simulation", "author": "Kjell Nygren", "engine": "knitr::rmarkdown", "headings": [ "Chapter 11: Point estimates without simulation", "Iterated conditional modes", "It really is the posterior mean", "What you get and what you do not", "The non-Gaussian case", "When to use it", "See also" ], "created": "2020-07-05 13:36:43", "modified": "2026-08-11 00:19:48", "commits": 34 }, { "source": "Chapter-12.Rmd", "filename": "Chapter-12.html", "title": "Chapter 12: Row-block models", "author": "Kjell Nygren", "engine": "knitr::rmarkdown", "headings": [ "Chapter 12: 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